If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ), 'gf_id' => 'HOM05D000588', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000588' ), 'data_identifier' => 'HOM05D000588', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000588', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '946', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p25100' => 'bna', 'A02p09520' => 'bna', 'A03p13840' => 'bna', 'A03p27180' => 'bna', 'A03p37750' => 'bna', 'A03p60650' => 'bna', 'A04p18770' => 'bna', 'A04p33860' => 'bna', 'A05p05500' => 'bna', 'A05p36840' => 'bna', 'A06p20870' => 'bna', 'A06p27990' => 'bna', 'A07p25260' => 'bna', 'A08p18680' => 'bna', 'A09p53130' => 'bna', 'A09p56290' => 'bna', 'A10p12990' => 'bna', 'Aa31LG10G15120' => 'aar', 'Aa31LG1G26970' => 'aar', 'Aa31LG2G18990' => 'aar', 'Aa31LG3G11660' => 'aar', 'Aa31LG4G15550' => 'aar', 'Aa31LG7G11440' => 'aar', 'Aa31LG8G20' => 'aar', 'Aa31sc324G10' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1234' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.2577' => 'aag', 'Actinidia03345' => 'ach', 'Actinidia05006' => 'ach', 'Actinidia07865' => 'ach', 'Actinidia08683' => 'ach', 'Actinidia09790' => 'ach', 'Actinidia12273' => 'ach', 'Actinidia12696' => 'ach', 'Actinidia18269' => 'ach', 'Actinidia23942' => 'ach', 'Actinidia27511' => 'ach', 'Actinidia31427' => 'ach', 'Actinidia37205' => 'ach', 'Ah.01g002660' => 'amhyb', 'Ah.04g166590' => 'amhyb', 'Ah.05g172960' => 'amhyb', 'Ah.08g219490' => 'amhyb', 'Ah.15g097240' => 'amhyb', 'AL3G24330' => 'aly', 'AL4G14880' => 'aly', 'AL4G44640' => 'aly', 'AL5G25410' => 'aly', 'AL5G43220' => 'aly', 'AL7G20700' => 'aly', 'AL8G31310' => 'aly', 'AL9U12240' => 'aly', 'Aqoxy4G02285' => 'aox', 'Aqoxy4G02917' => 'aox', 'Aqoxy7G00561' => 'aox', 'Aqoxy7G03049' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E9YC8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.1Z63XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.42PK2U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57ZBEA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.60SBBK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C516TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EVY9MP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ITDE6T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UKG3SI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V7KKLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YEUZ05' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YISM4Y' => 'arhy', 'AT2G24450' => 'ath', 'AT2G45470' => 'ath', 'AT3G12660' => 'ath', 'AT3G46550' => 'ath', 'AT3G60900' => 'ath', 'AT4G12730' => 'ath', 'AT4G31370' => 'ath', 'AT5G55730' => 'ath', 'ATR0559G275' => 'atr', 'ATR0580G196' => 'atr', 'ATR0665G173' => 'atr', 'ATR0691G040' => 'atr', 'ATR0757G219' => 'atr', 'Atru.chr1.2835' => 'acertr', 'Atru.chr2.3688' => 'acertr', 'Atru.chr3.3897' => 'acertr', 'Atru.chr5.329' => 'acertr', 'Atru.chr6.3398' => 'acertr', 'Atru.chr7.2622' => 'acertr', 'Atru.chr7.2623' => 'acertr', 'AUR62001791' => 'cqu', 'AUR62004234' => 'cqu', 'AUR62009579' => 'cqu', 'AUR62013614' => 'cqu', 'AUR62015001' => 'cqu', 'AUR62017103' => 'cqu', 'AUR62020621' => 'cqu', 'AUR62029120' => 'cqu', 'AUR62036457' => 'cqu', 'AUR62038761' => 'cqu', 'BcaB01g00769' => 'bca', 'BcaB01g01009' => 'bca', 'BcaB01g02990' => 'bca', 'BcaB02g07394' => 'bca', 'BcaB02g08999' => 'bca', 'BcaB02g09570' => 'bca', 'BcaB04g18714' => 'bca', 'BcaB05g22975' => 'bca', 'BcaB06g25526' => 'bca', 'BcaB06g27970' => 'bca', 'BcaB08g35931' => 'bca', 'BcaC01g01094' => 'bca', 'BcaC01g01907' => 'bca', 'BcaC01g02381' => 'bca', 'BcaC01g04027' => 'bca', 'BcaC01g04884' => 'bca', 'BcaC01g06390' => 'bca', 'BcaC02g07089' => 'bca', 'BcaC02g07090' => 'bca', 'BcaC02g08454' => 'bca', 'BcaC02g12204' => 'bca', 'BcaC04g20204' => 'bca', 'BcaC05g29250' => 'bca', 'BcaC07g40609' => 'bca', 'BcaC07g40930' => 'bca', 'BcaC07g42647' => 'bca', 'BcaC08g45092' => 'bca', 'BcaC09g49915' => 'bca', 'BcaNung01525' => 'bca', 'BcaNung01526' => 'bca', 'BcaNung01527' => 'bca', 'BcaNung01528' => 'bca', 'BcaNung04574' => 'bca', 'BNapus_Darmor_BZH_scaffold_149p00180' => 'bna', 'BolC1t03070H' => 'bol', 'BolC1t05190H' => 'bol', 'BolC2t07690H' => 'bol', 'BolC3t14051H' => 'bol', 'BolC3t14052H' => 'bol', 'BolC3t15603H' => 'bol', 'BolC3t16857H' => 'bol', 'BolC3t18847H' => 'bol', 'BolC3t19345H' => 'bol', 'BolC3t21114H' => 'bol', 'BolC4t22267H' => 'bol', 'BolC4t26957H' => 'bol', 'BolC4t28664H' => 'bol', 'BolC5t34194H' => 'bol', 'BolC6t37872H' => 'bol', 'BolC7t46311H' => 'bol', 'BolC8t50013H' => 'bol', 'BolC8t51172H' => 'bol', 'BolC8t51498H' => 'bol', 'BolC9t57520H' => 'bol', 'BraA01t02421Z' => 'bra', 'BraA01t04118Z' => 'bra', 'BraA02t06016Z' => 'bra', 'BraA03t10687Z' => 'bra', 'BraA03t11931Z' => 'bra', 'BraA03t12930Z' => 'bra', 'BraA03t15107Z' => 'bra', 'BraA04t17486Z' => 'bra', 'BraA04t18846Z' => 'bra', 'BraA05t19520Z' => 'bra', 'BraA05t22485Z' => 'bra', 'BraA06t25168Z' => 'bra', 'BraA06t25740Z' => 'bra', 'BraA07t30168Z' => 'bra', 'BraA08t33829Z' => 'bra', 'BraA09t40738Z' => 'bra', 'BraA09t41024Z' => 'bra', 'BraA10t43393Z' => 'bra', 'C01p31330' => 'bna', 'C01p52520' => 'bna', 'C02p15860' => 'bna', 'C03p16290' => 'bna', 'C03p32670' => 'bna', 'C03p45820' => 'bna', 'C03p65890' => 'bna', 'C03p70730' => 'bna', 'C03p88030' => 'bna', 'C04p06440' => 'bna', 'C04p54060' => 'bna', 'C04p71590' => 'bna', 'C05p55290' => 'bna', 'C06p26980' => 'bna', 'C07p58560' => 'bna', 'C08p35830' => 'bna', 'C08p39240' => 'bna', 'C09p46710' => 'bna', 'CAN.G1305.32' => 'can', 'CAN.G137.59' => 'can', 'CAN.G137.60' => 'can', 'CAN.G170.7' => 'can', 'CAN.G177.11' => 'can', 'CAN.G294.29' => 'can', 'CAN.G337.1' => 'can', 'CAN.G353.22' => 'can', 'CAN.G394.55' => 'can', 'CAN.G492.38' => 'can', 'CAN.G67.11' => 'can', 'CAN.G93.8' => 'can', 'CANSAT11G2243' => 'cansat', 'CANSAT21G2213' => 'cansat', 'CANSAT35G1066' => 'cansat', 'CANSAT56G1470' => 'cansat', 'CANSAT64G0806' => 'cansat', 'CARHR087170' => 'chi', 'CARHR117610' => 'chi', 'CARHR140660' => 'chi', 'CARHR155250' => 'chi', 'CARHR171290' => 'chi', 'CARHR220550' => 'chi', 'CARHR239250' => 'chi', 'CARHR269050' => 'chi', 'Carub.0003s1201' => 'cru', 'Carub.0004s0380' => 'cru', 'Carub.0004s2808' => 'cru', 'Carub.0005s1282' => 'cru', 'Carub.0005s2765' => 'cru', 'Carub.0007s0919' => 'cru', 'Carub.0007s3047' => 'cru', 'Carub.0008s1610' => 'cru', 'Ca_02403_v3' => 'car', 'Ca_06482_v3' => 'car', 'Ca_07833_v3' => 'car', 'Ca_12877_v3' => 'car', 'Ca_15672_v3' => 'car', 'Ca_22141_v3' => 'car', 'Cc00_g06800' => 'ccan', 'Cc01_g12820' => 'ccan', 'Cc02_g36510' => 'ccan', 'Cc05_g14940' => 'ccan', 'Cc08_g06560' => 'ccan', 'CDE01G0280' => 'cde', 'CDE02G1900' => 'cde', 'CDE02G3132' => 'cde', 'CDE02G4411' => 'cde', 'CDE04G0223' => 'cde', 'CDE04G3587' => 'cde', 'CDE05G2710' => 'cde', 'CDE05G2784' => 'cde', 'CDE06G1147' => 'cde', 'CDE06G1832' => 'cde', 'CDE07G0122' => 'cde', 'CDE11G0035' => 'cde', 'Cfa001698' => 'cfa', 'Cfa002022' => 'cfa', 'Cfa005179' => 'cfa', 'Cfa006011' => 'cfa', 'Cfa008021' => 'cfa', 'Cfa011497' => 'cfa', 'Cfa014224' => 'cfa', 'Cfa020192' => 'cfa', 'Ciclev10008218m.g' => 'ccl', 'Ciclev10010765m.g' => 'ccl', 'Ciclev10015469m.g' => 'ccl', 'Ciclev10020328m.g' => 'ccl', 'Ciclev10028444m.g' => 'ccl', 'CiPaw.02G166200' => 'cil', 'CiPaw.04G197200' => 'cil', 'CiPaw.07G214200' => 'cil', 'CiPaw.11G203900' => 'cil', 'CiPaw.13G094900' => 'cil', 'CiPaw.14G068600' => 'cil', 'ClCG02G002910' => 'cla', 'ClCG03G001570' => 'cla', 'ClCG05G017460' => 'cla', 'ClCG06G000310' => 'cla', 'ClCG08G012750' => 'cla', 'ClCG09G021350' => 'cla', 'ClCG10G004330' => 'cla', 'COL.COLO4_05357' => 'col', 'COL.COLO4_09831' => 'col', 'COL.COLO4_12576' => 'col', 'COL.COLO4_18502' => 'col', 'COL.COLO4_19049' => 'col', 'COL.COLO4_30898' => 'col', 'Cpa.g.sc12.146' => 'cpa', 'Cpa.g.sc1351.1' => 'cpa', 'Cpa.g.sc136.32' => 'cpa', 'Cpa.g.sc18.139' => 'cpa', 'Cpa.g.sc244.12' => 'cpa', 'CsaV3_1G030240' => 'csa', 'CsaV3_1G034110' => 'csa', 'CsaV3_2G031480' => 'csa', 'CsaV3_3G004110' => 'csa', 'CsaV3_3G046960' => 'csa', 'CsaV3_5G013370' => 'csa', 'CsaV3_6G006100' => 'csa', 'CsaV3_7G002480' => 'csa', 'CsaV3_7G011310' => 'csa', 'CSS0002775' => 'camsi', 'CSS0007929' => 'camsi', 'CSS0025175' => 'camsi', 'CSS0025492' => 'camsi', 'CSS0034345' => 'camsi', 'CSS0042064' => 'camsi', 'CSS0046782' => 'camsi', 'CSS0049697' => 'camsi', 'DCAR_005327' => 'dca', 'DCAR_008566' => 'dca', 'DCAR_013231' => 'dca', 'DCAR_015538' => 'dca', 'DCAR_015624' => 'dca', 'DCAR_017081' => 'dca', 'DCAR_019227' => 'dca', 'DCAR_019677' => 'dca', 'DCAR_021382' => 'dca', 'Dinv10332' => 'din', 'Dinv12419' => 'din', 'Dinv16996' => 'din', 'Dinv18140' => 'din', 'Dinv21300' => 'din', 'Dinv26602' => 'din', 'Dinv32392' => 'din', 'Dinv40859' => 'din', 'Dinv42945' => 'din', 'Dinv43155' => 'din', 'Dinv43726' => 'din', 'Duzib133G1356' => 'dzi', 'Duzib133G1538' => 'dzi', 'Duzib138G0311' => 'dzi', 'Duzib138G1626' => 'dzi', 'Duzib160G0862' => 'dzi', 'Duzib168G2201' => 'dzi', 'Duzib168G2354' => 'dzi', 'Duzib170G0065' => 'dzi', 'Duzib170G0725' => 'dzi', 'Duzib187G1853' => 'dzi', 'Duzib192G0089' => 'dzi', 'Duzib213G0286' => 'dzi', 'ECA232G1975' => 'eca', 'ECA234G4244' => 'eca', 'ECA236G3501' => 'eca', 'ECA236G4449' => 'eca', 'ECA240G0092' => 'eca', 'ECA246G3463' => 'eca', 'EL10Ac1g00936' => 'bvu', 'EL10Ac2g03724' => 'bvu', 'EL10Ac4g07566' => 'bvu', 'EL10Ac7g16014' => 'bvu', 'EL10Ac9g22674' => 'bvu', 'Eucgr.B02370' => 'egr', 'Eucgr.C02101' => 'egr', 'Eucgr.F00426' => 'egr', 'Eucgr.F02049' => 'egr', 'Eucgr.F03689' => 'egr', 'Eucgr.H00875' => 'egr', 'Eucgr.J03138' => 'egr', 'FAN01G2527' => 'fan', 'FAN02G1691' => 'fan', 'FAN03G2039' => 'fan', 'FAN05G1800' => 'fan', 'FAN05G2153' => 'fan', 'FAN05G4353' => 'fan', 'FAN06G2939' => 'fan', 'FAN06G4328' => 'fan', 'FAN08G0698' => 'fan', 'FAN09G0015' => 'fan', 'FAN09G2449' => 'fan', 'FAN10G0388' => 'fan', 'FAN10G1229' => 'fan', 'FAN11G0300' => 'fan', 'FAN11G1254' => 'fan', 'FAN11G1887' => 'fan', 'FAN14G0488' => 'fan', 'FAN14G5386' => 'fan', 'FAN14G5744' => 'fan', 'FAN15G1139' => 'fan', 'FAN15G1713' => 'fan', 'FAN15G2990' => 'fan', 'FAN16G2926' => 'fan', 'FAN16G3196' => 'fan', 'FAN18G4475' => 'fan', 'FAN19G1151' => 'fan', 'FAN20G1636' => 'fan', 'FAN20G1938' => 'fan', 'FAN20G2865' => 'fan', 'FAN21G0543' => 'fan', 'FAN21G1353' => 'fan', 'FAN21G2810' => 'fan', 'FAN24G1622' => 'fan', 'FAN24G3250' => 'fan', 'FAN25G0853' => 'fan', 'FAN25G1471' => 'fan', 'FAN25G3810' => 'fan', 'FAN27G0561' => 'fan', 'FAN27G0791' => 'fan', 'FAN27G0906' => 'fan', 'FAN27G1797' => 'fan', 'FvH4_2g30720' => 'fve', 'FvH4_2g30730' => 'fve', 'FvH4_2g30760' => 'fve', 'FvH4_3g27411' => 'fve', 'FvH4_3g29120' => 'fve', 'FvH4_3g36000' => 'fve', 'FvH4_3g38472' => 'fve', 'FvH4_4g01271' => 'fve', 'FvH4_4g15324' => 'fve', 'FvH4_6g28020' => 'fve', 'FvH4_6g40590' => 'fve', 'FvH4_7g12120' => 'fve', 'Glyma.02G308700' => 'gma', 'Glyma.03G129200' => 'gma', 'Glyma.04G074600' => 'gma', 'Glyma.06G075700' => 'gma', 'Glyma.08G329900' => 'gma', 'Glyma.09G048100' => 'gma', 'Glyma.09G267700' => 'gma', 'Glyma.10G044900' => 'gma', 'Glyma.13G371700' => 'gma', 'Glyma.14G004200' => 'gma', 'Glyma.14G133200' => 'gma', 'Glyma.15G155400' => 'gma', 'Glyma.17G202000' => 'gma', 'Glyma.18G076600' => 'gma', 'Glyma.18G222200' => 'gma', 'Gohir.A01G091400' => 'ghi', 'Gohir.A06G106600' => 'ghi', 'Gohir.A06G141933' => 'ghi', 'Gohir.A06G142000' => 'ghi', 'Gohir.A07G098300' => 'ghi', 'Gohir.A07G192300' => 'ghi', 'Gohir.A11G081750' => 'ghi', 'Gohir.A11G148700' => 'ghi', 'Gohir.A12G102400' => 'ghi', 'Gohir.A13G133000' => 'ghi', 'Gohir.D01G061700' => 'ghi', 'Gohir.D03G125900' => 'ghi', 'Gohir.D06G108800' => 'ghi', 'Gohir.D06G145751' => 'ghi', 'Gohir.D06G147700' => 'ghi', 'Gohir.D07G102600' => 'ghi', 'Gohir.D07G198700' => 'ghi', 'Gohir.D10G049850' => 'ghi', 'Gohir.D11G086400' => 'ghi', 'Gohir.D11G155600' => 'ghi', 'Gohir.D12G105600' => 'ghi', 'Gohir.D13G136300' => 'ghi', 'Gorai.001G110500' => 'gra', 'Gorai.001G222400' => 'gra', 'Gorai.002G100100' => 'gra', 'Gorai.003G132100' => 'gra', 'Gorai.007G092300' => 'gra', 'Gorai.007G165800' => 'gra', 'Gorai.008G114900' => 'gra', 'Gorai.010G123500' => 'gra', 'Gorai.010G169900' => 'gra', 'Gorai.010G172200' => 'gra', 'Gorai.011G053400' => 'gra', 'Gorai.013G152900' => 'gra', 'GSVIVG01014684001' => 'vvi', 'GSVIVG01024973001' => 'vvi', 'GSVIVG01030085001' => 'vvi', 'HanXRQChr03g0075061' => 'han', 'HanXRQChr04g0126431' => 'han', 'HanXRQChr04g0126631' => 'han', 'HanXRQChr05g0134901' => 'han', 'HanXRQChr08g0233371' => 'han', 'HanXRQChr11g0350861' => 'han', 'HanXRQChr13g0425621' => 'han', 'HanXRQChr17g0557051' => 'han', 'Haze_02619' => 'cav', 'Haze_09823' => 'cav', 'Haze_12626' => 'cav', 'Haze_16836' => 'cav', 'Haze_21672' => 'cav', 'Haze_21710' => 'cav', 'Haze_24091' => 'cav', 'Hma1.2p1_0053F.1_g030810' => 'hma', 'Hma1.2p1_0418F.1_g149060' => 'hma', 'Hma1.2p1_1561F.1_g290710' => 'hma', 'HPP92_007352' => 'vpl', 'HPP92_011586' => 'vpl', 'HPP92_019409' => 'vpl', 'HPP92_019437' => 'vpl', 'HPP92_019438' => 'vpl', 'HPP92_021078' => 'vpl', 'Hund01552' => 'sun', 'Lalb_Chr01g0021311' => 'lal', 'Lalb_Chr08g0243621' => 'lal', 'Lalb_Chr10g0107641' => 'lal', 'Lalb_Chr14g0362211' => 'lal', 'Lalb_Chr14g0376151' => 'lal', 'Lalb_Chr15g0082121' => 'lal', 'Lalb_Chr15g0083661' => 'lal', 'Lalb_Chr17g0349301' => 'lal', 'Lalb_Chr18g0051921' => 'lal', 'Lalb_Chr18g0051931' => 'lal', 'Lalb_Chr19g0127241' => 'lal', 'Lalb_Chr20g0114361' => 'lal', 'Lalb_Chr23g0269051' => 'lal', 'Lalb_Chr24g0392781' => 'lal', 'Lj1A797T64' => 'lonja', 'Lj1g0006507' => 'lja', 'Lj1P154T18' => 'lonja', 'Lj1P889T54' => 'lonja', 'Lj2A1062T47' => 'lonja', 'Lj3A181T53' => 'lonja', 'Lj3A187T28' => 'lonja', 'Lj3C181T0' => 'lonja', 'Lj3C187T1' => 'lonja', 'Lj3g0010285' => 'lja', 'Lj3P180T17' => 'lonja', 'Lj3P187T15' => 'lonja', 'Lj5g0024116' => 'lja', 'Lj6g0000956' => 'lja', 'Lj6g0012231' => 'lja', 'Lj8A136T89' => 'lonja', 'Lj8A178T75' => 'lonja', 'Lj9C572G12' => 'lonja', 'LjContig00081g0010744' => 'lja', 'Lsat_1_v5_gn_1_113961' => 'lsa', 'Lsat_1_v5_gn_3_133421' => 'lsa', 'Lsat_1_v5_gn_4_37720' => 'lsa', 'Lsat_1_v5_gn_5_1800' => 'lsa', 'Lsat_1_v5_gn_7_96741' => 'lsa', 'Lsat_1_v5_gn_8_73140' => 'lsa', 'Lsat_1_v5_gn_9_103641' => 'lsa', 'Lsat_1_v5_gn_9_23341' => 'lsa', 'Manes.03G141200' => 'mes', 'Manes.04G034700' => 'mes', 'Manes.04G098500' => 'mes', 'Manes.05G043800' => 'mes', 'Manes.11G071100' => 'mes', 'Manes.11G130800' => 'mes', 'Manes.13G061700' => 'mes', 'Manes.15G059800' => 'mes', 'Mapoly0012s0106' => 'mpo', 'Mapoly0027s0079' => 'mpo', 'Mapoly0027s0080' => 'mpo', 'Mapoly0027s0081' => 'mpo', 'Mapoly0027s0083' => 'mpo', 'Mapoly0027s0084' => 'mpo', 'Mapoly0027s0087' => 'mpo', 'Mapoly0070s0054' => 'mpo', 'Mapoly0093s0009' => 'mpo', 'Mapoly0194s0008' => 'mpo', 'MBI04_g19222_MAGBIO' => 'mbi', 'MBI04_g47687_MAGBIO' => 'mbi', 'MBI05_g22049_MAGBIO' => 'mbi', 'MBI15_g31899_MAGBIO' => 'mbi', 'MBI16_g25210_MAGBIO' => 'mbi', 'MD02G1201100' => 'mdo', 'MD03G1179200' => 'mdo', 'MD08G1131800' => 'mdo', 'MD08G1134300' => 'mdo', 'MD09G1127000' => 'mdo', 'MD11G1109900' => 'mdo', 'MD11G1198600' => 'mdo', 'MD11G1198700' => 'mdo', 'MD15G1109400' => 'mdo', 'MD15G1109500' => 'mdo', 'MD17G1117400' => 'mdo', 'MD17G1229000' => 'mdo', 'MD17G1229100' => 'mdo', 'Medtr1g009910' => 'mtr', 'Medtr1g009920' => 'mtr', 'Medtr1g009940' => 'mtr', 'Medtr1g009950' => 'mtr', 'Medtr2g018340' => 'mtr', 'Medtr2g018380' => 'mtr', 'Medtr2g018430' => 'mtr', 'Medtr2g437700' => 'mtr', 'Medtr3g108760' => 'mtr', 'Medtr3g460780' => 'mtr', 'Medtr5g098420' => 'mtr', 'Medtr7g075453' => 'mtr', 'Medtr8g069000' => 'mtr', 'MELO3C003641.2' => 'cme', 'MELO3C011198.2' => 'cme', 'MELO3C014107.2' => 'cme', 'MELO3C020643.2' => 'cme', 'MELO3C022507.2' => 'cme', 'MELO3C024192.2' => 'cme', 'MELO3C024938.2' => 'cme', 'Migut.A00426' => 'egut', 'Migut.B01652' => 'egut', 'Migut.H01274' => 'egut', 'Migut.H01755' => 'egut', 'Migut.M00081' => 'egut', 'Migut.M01653' => 'egut', 'Migut.N02676' => 'egut', 'MSTRG.12648' => 'ama', 'MSTRG.14105' => 'ama', 'MSTRG.14487' => 'ama', 'MSTRG.14891' => 'ama', 'MSTRG.17208' => 'ama', 'MSTRG.18582' => 'ama', 'MSTRG.21200' => 'ama', 'MSTRG.25798' => 'ama', 'MSTRG.6997' => 'ama', 'Nitab4.5_0000163g0200' => 'nta', 'Nitab4.5_0000461g0290' => 'nta', 'Nitab4.5_0000514g0120' => 'nta', 'Nitab4.5_0000555g0090' => 'nta', 'Nitab4.5_0000555g0120' => 'nta', 'Nitab4.5_0000622g0010' => 'nta', 'Nitab4.5_0000622g0020' => 'nta', 'Nitab4.5_0001701g0170' => 'nta', 'Nitab4.5_0002011g0020' => 'nta', 'Nitab4.5_0002403g0050' => 'nta', 'Nitab4.5_0002947g0030' => 'nta', 'Nitab4.5_0003328g0020' => 'nta', 'Nitab4.5_0003753g0010' => 'nta', 'Nitab4.5_0004125g0010' => 'nta', 'Nitab4.5_0004320g0030' => 'nta', 'Nitab4.5_0005524g0020' => 'nta', 'Nitab4.5_0006166g0020' => 'nta', 'Nitab4.5_0007342g0010' => 'nta', 'Nitab4.5_0007342g0040' => 'nta', 'Nitab4.5_0009011g0010' => 'nta', 'Nitab4.5_0009174g0010' => 'nta', 'Nitab4.5_0021283g0010' => 'nta', 'Nitab4.5_0025536g0010' => 'nta', 'Nn1g01170' => 'nnu', 'Nn1g03081' => 'nnu', 'Nn1g03173' => 'nnu', 'Nn1g04824' => 'nnu', 'Nn1g07507' => 'nnu', 'Nn2g10372' => 'nnu', 'Nn2g13349' => 'nnu', 'Nn2g15189' => 'nnu', 'Nn3g19645' => 'nnu', 'Nn4g22602' => 'nnu', 'Nn4g25130' => 'nnu', 'Nn5g26920' => 'nnu', 'Nn5g28475' => 'nnu', 'Nn8g40479' => 'nnu', 'Oeu014358.1' => 'oeu', 'Oeu019197.1' => 'oeu', 'Oeu030067.1' => 'oeu', 'Oeu033452.3' => 'oeu', 'Oeu037900.1' => 'oeu', 'Oeu054146.1' => 'oeu', 'Os01g0841100' => 'osa', 'Os02g0461000' => 'osa', 'Os02g0461500' => 'osa', 'Os02g0483000' => 'osa', 'Os02g0726000' => 'osa', 'Os03g0128000' => 'osa', 'Os04g0283600' => 'osa', 'Os04g0574200' => 'osa', 'Os05g0459700' => 'osa', 'Os06g0285100' => 'osa', 'Os06g0656800' => 'osa', 'Os08g0321000' => 'osa', 'Os08g0490600' => 'osa', 'Os09g0248100' => 'osa', 'Os09g0476800' => 'osa', 'Peaxi162Scf00006g00031' => 'pax', 'Peaxi162Scf00021g00132' => 'pax', 'Peaxi162Scf00045g00165' => 'pax', 'Peaxi162Scf00045g00167' => 'pax', 'Peaxi162Scf00045g02010' => 'pax', 'Peaxi162Scf00047g02040' => 'pax', 'Peaxi162Scf00089g01810' => 'pax', 'Peaxi162Scf00225g00017' => 'pax', 'Peaxi162Scf00774g00007' => 'pax', 'Peaxi162Scf00802g00014' => 'pax', 'Peaxi162Scf01164g00024' => 'pax', 'PGR031G0548' => 'pgr', 'PGR031G2991' => 'pgr', 'PGR042G1825' => 'pgr', 'PGR042G2279' => 'pgr', 'PGR083G0392' => 'pgr', 'PGR083G1878' => 'pgr', 'PGR102G2795' => 'pgr', 'PGSC0003DMG400004298' => 'stu', 'PGSC0003DMG400009531' => 'stu', 'PGSC0003DMG400009537' => 'stu', 'PGSC0003DMG400012749' => 'stu', 'PGSC0003DMG400014408' => 'stu', 'PGSC0003DMG400017376' => 'stu', 'PGSC0003DMG400018093' => 'stu', 'PGSC0003DMG400022279' => 'stu', 'PGSC0003DMG400026273' => 'stu', 'PGSC0003DMG400029811' => 'stu', 'PGSC0003DMG400030411' => 'stu', 'Phvul.001G058300' => 'pvu', 'Phvul.005G184100' => 'pvu', 'Phvul.006G057400' => 'pvu', 'Phvul.008G075000' => 'pvu', 'Phvul.008G288800' => 'pvu', 'Phvul.009G100266' => 'pvu', 'Phvul.009G100400' => 'pvu', 'Phvul.009G244800' => 'pvu', 'Potri.001G037800' => 'ptr', 'Potri.001G367900' => 'ptr', 'Potri.006G174900' => 'ptr', 'Potri.006G276200' => 'ptr', 'Potri.011G093500' => 'ptr', 'Potri.014G071700' => 'ptr', 'Potri.014G168100' => 'ptr', 'Potri.018G005100' => 'ptr', 'Potri.018G097000' => 'ptr', 'Pp3c26_5590' => 'ppa', 'Pp3c4_16840' => 'ppa', 'Pp3c7_430' => 'ppa', 'Prupe.1G461700' => 'ppe', 'Prupe.1G461800' => 'ppe', 'Prupe.2G000400' => 'ppe', 'Prupe.2G147700' => 'ppe', 'Prupe.3G106500' => 'ppe', 'Prupe.3G106700' => 'ppe', 'Prupe.3G197200' => 'ppe', 'Prupe.4G244100' => 'ppe', 'Prupe.6G078300' => 'ppe', 'Psat1g151360' => 'psa', 'Psat2g002920' => 'psa', 'Psat3g115120' => 'psa', 'Psat5g025480' => 'psa', 'Psat5g025520' => 'psa', 'Psat5g167520' => 'psa', 'Psat6g032280' => 'psa', 'PSO063G3851' => 'pso', 'PSO063G4896' => 'pso', 'PSO170G1176' => 'pso', 'PSO339G2986' => 'pso', 'PSO384G2134' => 'pso', 'PSO478G3866' => 'pso', 'PSO541G3746' => 'pso', 'PSO675G2013' => 'pso', 'PSO782G1586' => 'pso', 'QL01p032133' => 'qlo', 'QL04p068433' => 'qlo', 'QL05p081451' => 'qlo', 'QL08p004159' => 'qlo', 'QL08p051887' => 'qlo', 'QL12p024744' => 'qlo', 'QL12p024761' => 'qlo', 'RcHm_v2.0_Chr1g0350871' => 'rch', 'RcHm_v2.0_Chr2g0131711' => 'rch', 'RcHm_v2.0_Chr2g0155911' => 'rch', 'RcHm_v2.0_Chr5g0031841' => 'rch', 'RcHm_v2.0_Chr5g0051361' => 'rch', 'RcHm_v2.0_Chr5g0053441' => 'rch', 'RcHm_v2.0_Chr5g0064411' => 'rch', 'RcHm_v2.0_Chr5g0069241' => 'rch', 'RcHm_v2.0_Chr5g0070751' => 'rch', 'RcHm_v2.0_Chr5g0077481' => 'rch', 'RcHm_v2.0_Chr6g0312141' => 'rch', 'RcHm_v2.0_Chr6g0312161' => 'rch', 'Rhsim01G0062500' => 'rsi', 'Rhsim01G0063700' => 'rsi', 'Rhsim01G0161900' => 'rsi', 'Rhsim01G0227300' => 'rsi', 'Rhsim06G0176800' => 'rsi', 'Rhsim06G0229600' => 'rsi', 'Rhsim07G0025400' => 'rsi', 'Rhsim08G0201200' => 'rsi', 'Sabra06G0214000' => 'sbr', 'Sabra11G0088100' => 'sbr', 'Sabra14G0050900' => 'sbr', 'Sabra14G0127700' => 'sbr', 'Sabra16G0240900' => 'sbr', 'Sabra18G0000300' => 'sbr', 'Sabra18G0010700' => 'sbr', 'Sabra18G0084200' => 'sbr', 'SalBow1G6051' => 'sbo', 'SalBow2G2620' => 'sbo', 'SalBow3G2904' => 'sbo', 'SalBow7G2656' => 'sbo', 'Sc03g0011280' => 'sci', 'Sc09g0007990' => 'sci', 'Sc21g0000540' => 'sci', 'Sc21g0005760' => 'sci', 'Sc23g0003490' => 'sci', 'Sc23g0004320' => 'sci', 'Sed0000808' => 'sed', 'Sed0002536' => 'sed', 'Sed0008826' => 'sed', 'Sed0011221' => 'sed', 'Sed0015897' => 'sed', 'Sed0017398' => 'sed', 'Sed0018795' => 'sed', 'Sed0019487' => 'sed', 'Sed0021089' => 'sed', 'Sed0024999' => 'sed', 'Sed0026725' => 'sed', 'Sed0027153' => 'sed', 'SEGI_02718' => 'sgi', 'SEGI_17500' => 'sgi', 'SEGI_34657' => 'sgi', 'SEGI_36070' => 'sgi', 'SEGI_36343' => 'sgi', 'SEGI_38266' => 'sgi', 'SGA_v2.0_scaffold153G37034' => 'sas', 'SGA_v2.0_scaffold168G38561' => 'sas', 'SGA_v2.0_scaffold181G39721' => 'sas', 'SGA_v2.0_scaffold193G40674' => 'sas', 'SGA_v2.0_scaffold199G41198' => 'sas', 'SGA_v2.0_scaffold203G41509' => 'sas', 'SGA_v2.0_scaffold27G11682' => 'sas', 'SGA_v2.0_scaffold366G50036' => 'sas', 'SGA_v2.0_scaffold42G15986' => 'sas', 'SGA_v2.0_scaffold61G21286' => 'sas', 'SHI05949' => 'shi', 'SHI13512' => 'shi', 'SHI26504' => 'shi', 'SMO114G0121' => 'smo', 'SMO137G0289' => 'smo', 'SMO174G0041' => 'smo', 'SMO203G0171' => 'smo', 'SMO234G0076' => 'smo', 'SMO236G0071' => 'smo', 'SMO236G0088' => 'smo', 'Solyc01g091530.4' => 'sly', 'Solyc03g112880.1' => 'sly', 'Solyc06g076120.2' => 'sly', 'Solyc07g045440.1' => 'sly', 'Solyc07g065540.1' => 'sly', 'Solyc08g006290.3' => 'sly', 'Solyc08g006295.1' => 'sly', 'Solyc08g006810.1' => 'sly', 'Solyc10g005960.1' => 'sly', 'Solyc12g006110.3' => 'sly', 'Solyc12g015690.3' => 'sly', 'Sopen01g037300' => 'spe', 'Sopen03g031960' => 'spe', 'Sopen06g032520' => 'spe', 'Sopen07g023980' => 'spe', 'Sopen07g033740' => 'spe', 'Sopen08g002270' => 'spe', 'Sopen08g002280' => 'spe', 'Sopen08g002760' => 'spe', 'Sopen10g001920' => 'spe', 'Sopen12g002070' => 'spe', 'Sopen12g007610' => 'spe', 'Sp3g10800' => 'spa', 'Sp3g10810' => 'spa', 'Sp4g03470' => 'spa', 'Sp4g27500' => 'spa', 'Sp5g02350' => 'spa', 'Sp5g15140' => 'spa', 'Sp6g17640' => 'spa', 'Sp7g08820' => 'spa', 'Sp7g29230' => 'spa', 'TAR375G1093' => 'tar', 'TAR383G0915' => 'tar', 'TAR623G0371' => 'tar', 'TAR624G0977' => 'tar', 'TAR625G0646' => 'tar', 'TAR626G0136' => 'tar', 'TAR626G1851' => 'tar', 'TAR629G1271' => 'tar', 'TAR629G2455' => 'tar', 'TAR633G2704' => 'tar', 'THA.LOC104799443' => 'tha', 'THA.LOC104803058' => 'tha', 'THA.LOC104803878' => 'tha', 'THA.LOC104804498' => 'tha', 'THA.LOC104810781' => 'tha', 'THA.LOC104811663' => 'tha', 'THA.LOC104815365' => 'tha', 'THA.LOC104815792' => 'tha', 'THA.LOC104817602' => 'tha', 'THA.LOC104817705' => 'tha', 'THA.LOC104826630' => 'tha', 'Thecc.01G196500' => 'tca', 'Thecc.01G374000' => 'tca', 'Thecc.06G133300' => 'tca', 'Thecc.07G013900' => 'tca', 'Thecc.09G005600' => 'tca', 'Thecc.09G322200' => 'tca', 'Thhalv10000470m.g' => 'esa', 'Thhalv10001463m.g' => 'esa', 'Thhalv10002543m.g' => 'esa', 'Thhalv10005998m.g' => 'esa', 'Thhalv10013639m.g' => 'esa', 'Thhalv10025352m.g' => 'esa', 'Thhalv10027390m.g' => 'esa', 'TPR.G12002' => 'tpr', 'TPR.G12060' => 'tpr', 'TPR.G12445' => 'tpr', 'TPR.G15642' => 'tpr', 'TPR.G18416' => 'tpr', 'TPR.G20777' => 'tpr', 'TPR.G22191' => 'tpr', 'TPR.G22197' => 'tpr', 'TPR.G24096' => 'tpr', 'TPR.G25146' => 'tpr', 'TPR.G26916' => 'tpr', 'TPR.G30924' => 'tpr', 'TPR.G30927' => 'tpr', 'TPR.G30928' => 'tpr', 'TPR.G32235' => 'tpr', 'TPR.G35890' => 'tpr', 'TPR.G35980' => 'tpr', 'TPR.G39366' => 'tpr', 'TPR.G39714' => 'tpr', 'TPR.G40127' => 'tpr', 'TPR.G690' => 'tpr', 'TPR.G7674' => 'tpr', 'TWI31G1202' => 'twi', 'TWI32G1312' => 'twi', 'TWI36G1047' => 'twi', 'TWI38G1774' => 'twi', 'TWI39G0229' => 'twi', 'TWI59G0566' => 'twi', 'TWI59G0688' => 'twi', 'TWI75G0139' => 'twi', 'TWI79G0909' => 'twi', 'unitig_0.g1294' => 'ugi', 'unitig_0.g2015' => 'ugi', 'unitig_0.g757' => 'ugi', 'unitig_52.g17034' => 'ugi', 'unitig_52.g17319' => 'ugi', 'unitig_61.g26406' => 'ugi', 'unitig_62.g23268' => 'ugi', 'unitig_736.g22965' => 'ugi', 'unitig_747.g21901' => 'ugi', 'unitig_85.g27322' => 'ugi', 'unitig_85.g27323' => 'ugi', 'unitig_90.g27565' => 'ugi', 'vmacro11588' => 'vma', 'vmacro12080' => 'vma', 'vmacro13382' => 'vma', 'vmacro19085' => 'vma', 'vmacro20998' => 'vma', 'VMungo0251G1681' => 'vmu', 'VMungo0464G1337' => 'vmu', 'VMungo0540G1332' => 'vmu', 'VMungo0647G0671' => 'vmu', 'VMungo0647G1080' => 'vmu', 'VMungo1080G0056' => 'vmu', 'VMungo1309G0153' => 'vmu', 'VMungo1309G0403' => 'vmu', 'VMungo1309G2866' => 'vmu', 'VMungo1383G1727' => 'vmu', 'Zm00001eb002090' => 'zma', 'Zm00001eb073440' => 'zma', 'Zm00001eb148360' => 'zma', 'Zm00001eb189500' => 'zma', 'Zm00001eb199320' => 'zma', 'Zm00001eb206820' => 'zma', 'Zm00001eb233740' => 'zma', 'Zm00001eb236720' => 'zma', 'Zm00001eb236740' => 'zma', 'Zm00001eb274860' => 'zma', 'Zm00001eb282320' => 'zma', 'Zm00001eb289670' => 'zma', 'Zm00001eb309110' => 'zma', 'Zm00001eb315990' => 'zma', 'Zm00001eb367960' => 'zma', 'Zm00001eb380720' => 'zma', 'Zm00001eb389410' => 'zma' ) $gf_id = 'HOM05D000588' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000588' ) $data_identifier = 'HOM05D000588' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 36, 'aar' => (int) 8, 'aag' => (int) 2, 'ach' => (int) 12, 'amhyb' => (int) 5, 'aly' => (int) 8, 'aox' => (int) 4, 'arhy' => (int) 12, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 7, 'cqu' => (int) 10, 'bca' => (int) 33, 'bol' => (int) 20, 'bra' => (int) 18, 'can' => (int) 12, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 6, 'ccan' => (int) 5, 'cde' => (int) 12, 'cfa' => (int) 8, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 7, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 9, 'din' => (int) 11, 'dzi' => (int) 12, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 41, 'fve' => (int) 12, 'gma' => (int) 15, 'ghi' => (int) 22, 'gra' => (int) 12, 'vvi' => (int) 3, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 3, 'vpl' => (int) 6, 'sun' => (int) 1, 'lal' => (int) 14, 'lonja' => (int) 13, 'lja' => (int) 6, 'lsa' => (int) 8, 'mes' => (int) 8, 'mpo' => (int) 10, 'mbi' => (int) 5, 'mdo' => (int) 13, 'mtr' => (int) 13, 'cme' => (int) 7, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 23, 'nnu' => (int) 14, 'oeu' => (int) 6, 'osa' => (int) 15, 'pax' => (int) 11, 'pgr' => (int) 7, 'stu' => (int) 11, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 12, 'rsi' => (int) 8, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 6, 'sed' => (int) 12, 'sgi' => (int) 6, 'sas' => (int) 10, 'shi' => (int) 3, 'smo' => (int) 7, 'sly' => (int) 11, 'spe' => (int) 11, 'spa' => (int) 9, 'tar' => (int) 10, 'tha' => (int) 11, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 22, 'twi' => (int) 9, 'ugi' => (int) 12, 'vma' => (int) 5, 'vmu' => (int) 10, 'zma' => (int) 17 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb389410' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1